ApPredict containers

Note

Docker containers cardiacmodelling/appredict-chaste-libs, cardiacmodelling/appredict-no-emulators and cardiacmodelling/appredict-with-emulators are derived from source code in https://github.com/CardiacModelling/appredict-docker (or via the appredict-docker submodule of https://github.com/CardiacModelling/ap-nimbus).

See also

ApPredict containers for visual representation.

appredict-chaste-libs

cardiacmodelling/appredict-chaste-libs is a container which contains all of ApPredict‘s library dependencies.

  • Conventionally cardiacmodelling/appredict-chaste-libs isn’t “installed” as it’s just a Debian Docker image with all of ApPredict‘s dependency packages installed, and as such just the foundation for cardiacmodelling/appredict-no-emulators to build on.

  • Historically (before cardiacmodelling/appredict-chaste-libs:0.0.5) this container’s contents were mostly built from source packages of dependent libraries.

  • There’s no “running” of cardiacmodelling/appredict-chaste-libs.

appredict-no-emulators

cardiacmodelling/appredict-no-emulators is a container which has cardiacmodelling/appredict-chaste-libs as its foundation, and it is the minimum necessary to run ApPredict simulations via CLI.

appredict-with-emulators

cardiacmodelling/appredict-with-emulators is a container which has cardiacmodelling/appredict-no-emulators as its foundation, with all the Lookup Tables (https://cardiac.nottingham.ac.uk/lookup_tables/appredict_lookup_table_manifest.txt) available at build time pre-installed to avoid the need to dynamically download them.